Tiny sensors for major advances
Using NMR spectrometry to analyse important molecules that have not been accessible before now
An international research team involving the working group of biophysicist Dr. Manuel Etzkorn from Heinrich Heine University Düsseldorf (HHU) has developed an approach for using NMR spectrometry to analyse important molecules that have not been accessible before now. In the journal Angewandte Chemie, the authors describe a simpler and efficient means of labelling the molecules with methyl groups as sensors.
Illustration of synthesis products which can be applied to, e.g., eucaryotic cell culture, to generate proteins with suitable methyl sensors. The resulting NMR signal is strongly increased.
HHU / Dr. Manuel Etzkorn
To understand life at molecular level, we need to be able to investigate the central components such as proteins in as natural a form and environment as possible. NMR or ‘nuclear magnetic resonance’ spectroscopy offers unique opportunities in this regard.
Methyl groups within proteins are particularly suitable sensors for use in this method. Methyl groups are composed of one carbon and three hydrogen atoms. To amplify the signal from these sensors to a sufficient level, large portions of the remaining protein need to be enriched with deuterium atoms in complicated procedures. Deuterium is a hydrogen isotope with a proton and a neutron in its atomic nucleus. In the past, however, such enrichment was possible only using special production platforms.
As a result, the use of NMR spectroscopy to investigate systems that could not be produced using those platforms was either impossible or very limited. Such systems include in particular a whole range of therapeutically relevant systems such as antibodies or the class of GPCRs (‘G-protein coupled receptors’) targeted by a very large percentage of modern medicines.
A research team at HHU led by Dr. Manuel Etzkorn from the Institute of Physical Biology and the Biomolecular NMR Centre (which is run jointly by HHU and Forschungszentrum Jülich) collaborated with colleagues from Sofia University, Harvard Medical School and the Dana Faber Cancer Institute in Boston to develop a new method that can integrate the characteristics required of the sensors in all common production platforms. The synthesis method is considerably simpler and over 20 times more cost effective than previous methods for integrating methyl group sensors. It also works in systems that were inaccessible up to now.
The journal Angewandte Chemie put the research work on the front cover of its current edition. This highlights the special importance of this topic for improving biophysical basic research and the resulting development of new kinds of medicines.
Dr. Etzkorn emphasises: “The new method will allow us and others to investigate the building blocks of life in an amazing level of detail and in environments that are as natural as possible.”
Original publication
A. Dubey, N. Stoyanov, T. Viennet, S. Chhabra, S. Elter, J. Borggräfe, A. Viegas, R. Nowak, N. Burdzhiev, O. Petrov, E. Fischer, M. Etzkorn, V. Gelev, H. Arthanari; "Local deuteration enables NMR observation of methyl groups in proteins from eukaryotic and cell-free expression systems"; Angew. Chem. Int. Ed.; 2021
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