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PupaSuitePupaSuite is an interactive web-based SNP analysis tool that allows for the selection of relevant SNPs within a gene, based on different characteristics of the SNP itself, such as validation status, type, frequency/population data and putative functional properties (pathological SNPs, SNPs disrupting potential transcription factor binding sites, intron/exon boundaries...). Also, PupaSuite provides information about LD parameters (based on genotype data from HapMap) and identifies haplotype blocks and tag SNPs (using the Haploview program). Additional recommended knowledgePupaSuite operates with a collection of entries of dbSNP mapped to the Golden Path genome assembly, as implemented in human section of Ensembl (Hubbard T. et al, 2005). See also
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| This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "PupaSuite". A list of authors is available in Wikipedia. |
