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PupaSuitePupaSuite is an interactive web-based SNP analysis tool that allows for the selection of relevant SNPs within a gene, based on different characteristics of the SNP itself, such as validation status, type, frequency/population data and putative functional properties (pathological SNPs, SNPs disrupting potential transcription factor binding sites, intron/exon boundaries...). Also, PupaSuite provides information about LD parameters (based on genotype data from HapMap) and identifies haplotype blocks and tag SNPs (using the Haploview program). Product highlightPupaSuite operates with a collection of entries of dbSNP mapped to the Golden Path genome assembly, as implemented in human section of Ensembl (Hubbard T. et al, 2005). See also
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This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "PupaSuite". A list of authors is available in Wikipedia. |