Ecosystem ecology

Ecosystem ecology is the integrated study of biotic and abiotic components of ecosystems and their interactions within an ecosystem framework. This science examines how ecosystems work and relates this to their components such as chemicals, bedrock, soil, plants, and animals (Figure 1)  . A major focus of ecosystem ecology is on functional processes, ecological mechanisms that maintain the structure and services produced by ecosystems. These include primary productivity (production of biomass), decomposition, and trophic interactions. Studies of ecosystem function have greatly improved human understanding of sustainable production of forage, fiber, fuel, and provision of water. Functional processes are mediated by regional-to-local level climate, disturbance, and management thus ecosystem ecology provides a powerful framework for identifying ecological mechanisms that interact with global environmental problems, especially global warming and degradation of surface water. This article will describe the context of ecosystem ecology and provide an overview of the mechanisms that maintain ecosystem structure and function.

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Ecosystems and scale

Ecosystems are difficult entities to define theoretically or to delineate in space (Ehrenfeld and Toth 1997). For example, consider the forest in Figure 1. When standing on the stream bank, one can easily see two ecosystems, an aquatic one where fish, insects, and algae interact, and the other a terrestrial one with trees, another community of insects, and perhaps herbivores and predators such as deer and coyote. Although these communities appear distinct they interact intimately. Insects may be aquatic for certain parts of their life-cycle and emerge to become herbivores of the vegetation and prey for many predators. Riparian trees utilize stream water for growth and their leaf litter is an important flux of energy and nutrients to a rich community of benthic invertebrates (Vannote et al. 1980). The distinction becomes even less clear when streams flood and deposit nutrient rich sediment on flood planes and scour other areas clean of biota and soil.

This example demonstrates several important aspects of ecosystems: 1) ecosystem boundaries are often nebulous and may fluctuate in time 2) organism within ecosystems are dependent on ecosystem level biological and physical processes and 3) adjacent ecosystems closely interact and often are interdependent for maintenance of community structure and functional processes that maintain productivity and biodiversity. These characteristics also introduce practical problems into natural resource management. Who will manage which ecosystem? Will timber cutting in the forest degrade recreational fishing in the stream? These questions are difficult for land managers to address while the boundary between ecosystems remains unclear even though decisions in one ecosystem will affect the other. We need better understanding of the interactions and interdependencies of these ecosystems and the processes that maintain them before we can begin to address these questions.

Ecosystem ecology is an inherently interdisciplinary field of study. An individual ecosystem is composed of populations of organisms, interacting within communities, and contributing to the cycling of nutrients and the flow of energy. The ecosystem is the principle unit of study in ecosystem ecology (Figure 2). Population, community, and physiological ecology provide many of the underlying biological mechanisms influencing ecosystems and the processes they maintain. Cycling of energy and matter at the ecosystem level are often examined in ecosystem ecology but, as a whole this science is defined more by subject matter than by scale. Ecosystem ecology approaches organisms and abiotic pools of energy and nutrients as an integrated system which distinguishes it from associated sciences such as biogeochemistry (Chapin et al. 2003). Biogeochemistry and hydrology focus on several fundamental ecosystem processes such as biologically mediated chemical cycling of nutrients and physical-biological cycling of water. Ecosystem ecology forms the mechanistic basis for regional or global processes encompassed by landscape-to-regional hydrology, global biogeochemistry, and earth system science (Chapin et al. 2003).

A brief history of an emerging science

Ecosystem ecology is philosophically and historically rooted in terrestrial ecology. The ecosystem concept has evolved rapidly during the last 100 years with important ideas developed by Fredrick Clements, a botanist who argued for specific definitions of ecosystems and that physiological processes were responsible for their development and persistence (Hagen 1992). Although most of Clements ecosystem definitions have been greatly revised by contemporary ecologists, the idea that physiological processes are fundamental to ecosystem structure and function remains central to ecology. Later work by E.P. and H.T. Odum quantified flows of energy and matter at the ecosystem level, thus documenting the general ideas proposed by Clements and his contemporary Charles Elton, the intellectual father of the “food web” concept (Figure 3; Odum 1971) . In this model, energy flows through the whole system were dependent on biotic and abiotic interactions of each individual component (species, inorganic pools of nutrients, etc). Later work demonstrated that these interactions and flows applied to nutrient cycles, changed over the course of succession, and held powerful controls over ecosystem productivity (Odum 1969; Likens et al. 1970). Transfers of energy and nutrients are innate to ecological systems regardless of whether they are aquatic or terrestrial. Thus, ecosystem ecology has emerged from important biological studies of plants, animals, terrestrial, aquatic, and marine ecosystems.

Ecosystem services

Ecosystem services are ecologically mediated functional processes essential to sustaining healthy human societies (Chapin et al. 1997). Water provision and filtration, production of biomass in forestry, agriculture, and fisheries, and removal of greenhouse gases such as carbon dioxide (CO2) from the atmosphere are examples of ecosystem services essential to public health and economic opportunity. Nutrient cycling is a process fundamental to agricultural and forest production. However, like most ecosystem processes, nutrient cycling is not an ecosystem characteristic which can be “dialed” to the most desirable level. Maximizing production in degraded systems is an overly simplistic solution to the complex problems of hunger and economic security. For instance, intensive fertilizer use in the midwestern United States has resulted in degraded fisheries in the Gulf of Mexico (Defries et al. 2004). Regrettably, a “green revolution” of intensive chemical fertilization has been recommended for agriculture in developed and developing countries (Chrispeels and Sadava 1977; Quinones et al. 1997). These short-sighted strategies risk alteration of ecosystem processes that may be difficult to restore, especially when applied at broad scales without adequate assessment of impacts. Ecosystem processes may take many years to recover from significant disturbance (Likens et al. 1970). For instance, large-scale forest clearance in the northeastern United States during the 18th and 19th centuries has altered soil texture, dominant vegetation, and nutrient cycling in ways that impact forest productivity in the present day (Foster 1992; Motzkin et al. 1996). An appreciation of the importance of ecosystem function in maintenance of productivity, whether in agriculture or forestry, is needed in conjunction with plans for restoration of essential processes. Improved knowledge of ecosystem function will help to achieve long-term sustainability and stability in the poorest parts of the world.

How do ecosystems work?

Biomass productivity is one of the most apparent and economically important ecosystem functions. Biomass accumulation begins at the cellular level via photosynthesis. Photosynthesis requires water and consequently, global patters of annual biomass production are correlated with annual precipitation (Huxman et al. 2004). Amounts of productivity are also dependent on the overall capacity of plants to capture sunlight which is directly correlated with plant leaf area and leaf N content.

Net primary productivity (NPP) is the primary measure of biomass accumulation within an ecosystem. Net primary productivity can be calculated by a simple formula where total amount of productivity is adjusted for total productivity losses through maintenance of biological processes: NPP = GPP – Rplant Where GPP is gross primary productivity and Rplant is photosynthate (Carbon) lost via cellular respiration. NPP is difficult to measure but a new technique known as eddy co-variance has shed light on how natural ecosystems influence the atmosphere. Figure 4  shows seasonal and annual changes in CO2 concentration measured at Mauna Loa, Hawaii from approximately 1987 to 1990. CO2 concentration steadily increased but within-year variation has been greater than the annual increase since measurements began in 1957. These variations were thought to be due to seasonal uptake of CO2 during summer months. A newly developed technique for assessing ecosystem NPP has confirmed seasonal variation are driven by seasonal changes in CO2 uptake by vegetation (Goulden et al. 1996; Barford et al. 2001; Figure 4). This has led many scientists and policy makers to speculate that ecosystems can be managed to ameliorate problems with global warming. This type of management may include reforesting or altering forest harvest schedules many parts of the world.

Decomposition and nutrient cycling

Decomposition and nutrient cycling are fundamental to ecosystem biomass production. Most natural ecosystems are nitrogen (N) limited and biomass production is closely correlated with N turnover (Vitousek and Howarth 1991; Reich et al. 1997). Typically external input of nutrients is very low and efficient recycling of nutrients maintains productivity (Likens et al. 1970). Decomposition of plant litter accounts for the majority of nutrients recycled through ecosystems (Figure 3). Rates of plant litter decomposition are highly dependent on litter quality; high concentration of phenolic compounds, especially lignin, in plant litter has a retarding effect on litter decomposition (Mellilo et al. 1982; Hättenschwiler and Vitousek 2000). Globally, rates of decomposition are mediated by litter quality and climate (Meentemeyer 1978). Ecosystems dominated by plants with low-lignin concentration often have rapid rates of decomposition and nutrient cycling (Chapin et al. 1982). Simple carbon (C) containing compounds are preferentially metabolized by decomposer microorganisms which results in rapid initial rates of decomposition (Figure 5A; Aber and Mellilo 1982) . More complex C compounds are decomposed more slowly and may take many years to completely breakdown. Decomposition is typically described with exponential models that depend on constant rates of decay; so called “k” values (Figure 5B; Olson 1963). However, these models do not reflect simultaneous linear and non-linear decay processes which likely occur during decomposition. For instance, proteins, sugars and lipids decompose exponentially, but lignin decays at a more linear rate (Aber and Mellilo 1982; Mellilo et al. 1982). Thus, litter decay is probably inaccurately predicted by the most simplistic models (Carpenter 1981). A simple alternative model presented in Figure 5C shows significantly more rapid decomposition that the standard model of figure 4B. Better understanding of decomposition models is an important research area of ecosystem ecology because this process is closely tied to nutrient supply and the overall capacity of ecosystems to sequester CO2 from the atmosphere.

Trophic dynamics

Trophic dynamics refers to process of energy and nutrient transfer between organisms. Trophic dynamics is an important part of the structure and function of ecosystems. Figure 3 shows energy transferred for an ecosystem at Silver Springs, Florida. Energy gained by primary producers (plants, P) is consumed by herbivores (H), which are consumed by carnivores (C), which are themselves consumed by “top- carnivores”(TC). One of the most obvious patterns in Figure 3 is that as one moves up to higher trophic levels (i.e. from plants to top-carnivores) the total amount of energy decreases. Plants exert a “bottom-up” control on the energy structure of ecosystems by determining the total amount of energy that enters the system (Chapin et al. 2003). However, predators can also influence the structure of lower trophic levels from the top-down. So called top-down effects can dramatically shift dominant species in terrestrial and marine systems (Belovsky and Slade 2000; Frank et al. 2005). The interplay and relative strength of top-down vs. bottom-up controls on ecosystem structure and function is an important area of research in the greater field of ecology.

Trophic dynamics can strongly influence rates of decomposition and nutrient cycling in time and in space. For example, herbivory can increase litter decomposition and nutrient cycling via direct changes in litter quality and altered dominant vegetation (Hunter 2001). Insect herbivory has been shown to increase rates of decomposition and nutrient turnover due to changes in litter quality and increased frass inputs (Swank et al. 1981; Chapman et al. 2003). However, insect outbreak does not always increase nutrient cycling. Stadler et al. (2001) showed that C rich honeydew produced during aphid outbreak can result in increased N immobilization by soil microbes thus slowing down nutrient cycling and potentially limiting biomass production. North atlantic marine ecosystems have been greatly altered by overfishing of cod. Cod stocks crashed in the 1990’s which resulted in increases in their prey such as shrimp and snow crab (Frank et al. 2005). Human intervention in ecosystems has resulted in dramatic changes to ecosystem structure and function. These changes are occurring rapidly and have unknown consequences for economic security and human well being.

Applications: Why does this science matter?

Lessons from two Central American cities

The biosphere has been greatly altered by the demands of human societies. Ecosystem ecology plays an important role in understanding and adapting to the most pressing current environmental problems. Restoration ecology and ecosystem management are closely associated with ecosystem ecology. Restoring highly degraded resources depends on integration of functional mechanisms of ecosystems (Ehrenfeld and Toth 1997). Without these functions intact, economic value of ecosystems is greatly reduced and potentially dangerous conditions may develop in the field. For example, areas within the mountainous western highlands of Guatemala are more susceptible to catastrophic landslides and crippling seasonal water shortages due to loss of forest resources. In contrast, cities such as Totonicapán that have preserved forests through strong social institutions have greater local economic stability and overall greater human well being (Conz 2004). This situation is striking considering that these areas are close to each other, the majority of inhabitants are of Mayan descent, and the topography and overall resources are similar. This is a case of two groups of people managing resources in fundamentally different ways. Ecosystem ecology provides the basic science needed to avoid degradation and to restore ecosystem processes that provide for basic human needs.

Literature cited

• Aber, J.D., and J.M., Melillo 1982. Nitrogen immobilization in decaying hardwood leaf litter as a function of initial nitrogen and lignin content. Cannadian Journal of Botany 60:2263-2269.
• Barford, C. C., S. C. Wofsy, M. L. Goulden, J. W. Munger, E.Hammond Pyle, S. P. Urbanski, L. Hutyra, S. R. Saleska, D. Fitzjarrald and K. Moore. 2001. Factors controlling long and short term sequestration of atmospheric CO2 in a mid-latitude forest. Science 294: 1688-1691
• Belovsky, G.E. and J.B. Slade. 2000. Insect herbivory accelerates nutrient cycling and increases plant production. Proceedings of the national academy of sciences (USA). 97:14412-14417.
• Carpenter, S.A. 1981. Decay of heterogeneous detritus: a general model. Journal of theoretical biology 89:539-547.
• Chapin, F.S. III, B.H., Walker, R.J., Hobbs, D.U.,Hooper, J.H., Lawton, O.E., Sala, and D., Tilman. 1997. Biotic control over the functioning of ecosystems. Science 277:500-504.
• Chapin F.S. III, Matson, P.A., and Mooney, H.A. 2003. Principles of terrestrial ecosystem ecology. Springer-Verlag, New York, N.Y.
• Chapman, S.K., Hart, S.C., Cobb, N.S., Whitham, T.G., and Koch, G.W. 2003. Insect herbivory increases litter quality and decomposition: an extension of the acceleration hypothesis. Ecology 84:2867-2876.
• Chrispeels, M.J. and Sadava, D. 1977. Plants, food, and people. W. H. Freeman and Company, San Francisco.

Defries, R.S., J.A. Foley, and G.P. Asner. 2004. Land-use choices: balancing human needs and ecosystem function. Frontiers in ecology and environmental science. 2:249-257.

• Conz, B.W. 2004. Continuity and Contestation: Conservation Landscapes in Totonicapán , Guatemala. University of Massachussetss Masters of Science thesis.
• Ehrenfeld, J.G. and Toth, L.A. 1997. Restoration ecology and the ecosystem perspective. Restoration Ecology 5:307-317.
• Foster, D. R. 1992. Land-use history (1730-1990) and vegetation dynamics in central New England, USA. Journal of Ecology 80: 753-772.
• Goulden, M. L., J. W. Munger, S.-M. Fan, B. C. Daube, and S. C. Wofsy, 1996. Effects of interannual climate variability on the carbon dioxide exchange of a temperate deciduous forest. Science 271:1576-1578
• Hagen, J.B. 1992. An Entangled Bank: The origins of ecosystem ecology. Rutgers University Press, New Brunswick, N.J.
• Hättenschwiler S. and P.M. Vitousek 2000. The role of polyphenols in terrestrial ecosystem nutrient cycling. Trends in Ecology and Evolution 15: 238-243
• Hunter, M.D. 2001. insect population dynamics meets ecosystem ecology: effects of herbivory on soil nutrient dynamics. Agricultural and Forest Entomology 3:77-84.
• Huxman TE, MD. Smith, PA. Fay, AK. Knapp, MR Shaw, ME Loik, SD Smith, DT Tissue, JC Zak, JF Weltzin, WT Pockman, OE. Sala, B Haddad, J Harte, GW Koch, S Schwinning, EE Small, and DG Williams. 2004. Convergence across biomes to a common rain-use efficiency. Nature. 429: 651-654
• Keeling, C.D. and T.P. Whorf. 2005. Atmospheric CO2 records from sites in the SIO air sampling network. In Trends: A Compendium of Data on Global Change. Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tenn., U.S.A.
• Likens, G. E., F. H. Bormann, N. M. Johnson, D. W. Fisher and R. S. Pierce. 1970. Effects of forest cutting and herbicide treatment on nutrient budgets in the Hubbard Brook watershed-ecosystem. Ecological Monographs 40:23-47.
• Meentemeyer, V. 1978 Macroclimate and lignin control of litter decomposition rates. Ecology 59:465-472.
• Melillo, J.M., Aber, J.D., and Muratore, J.F. 1982. Nitrogen and lignin control of hardwood leaf litter decomposition dynamics. Ecology 63:621-626.
• Motzkin, G., D. R. Foster, A. Allen, J. Harrod, and R. D. Boone. 1996. Controlling site to evaluate history: vegetation patterns of a New England sand plain. Ecological Monographs 66: 345-365.
• Odum, E.P 1969. The strategy of ecosystem development. Science 164:262-270.
• Odum, H.T. 1971. Environment, Power, and Society. Wiley-Interscience New York, N.Y.
• Olson, J.S. 1963. Energy storage and the balance of producers and decomposers in ecological systems. Ecology 44:322-331.
• Quinones, M.A., N.E. Borlaug, C.R. Dowswell. 1997. A fertilizer-based green revolution for Africa. In: Replenishing soil fertility in Africa. Soil Science Society of America special publication number 51. Soil Science Society of America, Madison, WI.
• Reich, P.B., Grigal, D.F., Aber, J.D., Gower, S.T. 1997. Nitrogen mineralization and productivity in 50 hardwood and conifer stands on diverse soils. Ecology 78:335-347.
• Smith, ML. Ollinger, S.V. Martin, M.E. Aber, J.D., Hallett, R.A., and Goodale C.L. 2002. Direct estimation of aboveground forest productivity thorough hyperspectral remote sensing of canopy nitrogen. Ecological Applications 12:1286-.1302
• Stadler, B., Solinger, St., and Michalzik, B. 2001. Insect herbivores and the nutrient flow from the canopy to the soil in coniferous and deciduous forests. Oecologia 126:104-113
• Swank, W.T., Waide, J.B., Crossley, D.A., and Todd R.L. 1981. Insect defoliation enhances nitrate export from forest ecosystems. Oecologia 51:297-299.
• Vannote, R.I., Minshall, G.W., Cummings, K.W., Sedell, J.R., and Cushing, C.E. 1980. The river continuim concept. Cannadian Journal of Fisheries and Aquatic Science 37:120-137.
• Vitousek, P.M. and Howarth, R.W. 1991. Nitrogen limitation on land and in the sea: how can it occur? Biogeochemistry 13:87-115.

See also

• Biogeochemistry
• Community ecology
• Landscape ecology
• Systems ecology