C-value

The term C-value refers to the amount of DNA contained within a haploid nucleus (e.g., in a gamete or one half the amount in a diploid somatic cell) of a eukaryotic organism. In some cases (notably among diploid organisms), the terms C-value and genome size are used interchangeably, however in polyploids the C-value may represent two genomes contained within the same nucleus. Greilhuber et al. (2005) have suggested some new layers of terminology and associated abbreviations to clarify this issue, but these somewhat complex additions have yet to be used by other authors.

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Origin of the term

Many authors have incorrectly assumed that the "C" in "C-value" refers to "characteristic", "content", or "complement". Even among authors who have attempted to trace the origin of the term, there had been some confusion because Hewson Swift did not define it explicitly when he coined it in 1950. In his original paper, Swift appeared to use the designation "1C value", "2C value", etc., in reference to "classes" of DNA content (e.g., Gregory 2001, 2002); however, Swift explained in personal correspondence to Prof. Michael D. Bennett in 1975 that "I am afraid the letter C stood for nothing more glamorous than 'constant', i.e., the amount of DNA that was characteristic of a particular genotype" (quoted in Bennett and Leitch 2005). This is in reference to the report in 1948 by Vendrely and Vendrely of a "remarkable constancy in the nuclear DNA content of all the cells in all the individuals within a given animal species" (translated from the original French). Swift's study of this topic related specifically to variation (or lack thereof) among chromosome sets in different cell types within individuals, but his notation evolved into "C-value" in reference to the haploid DNA content of individual species and retains this usage today.

Variation among species

C-values vary enormously among species. In animals they range more than 3,300-fold, and in land plants they differ by a factor of about 1,000 (Bennett and Leitch 2005; Gregory 2005). Protist genomes have been reported to vary more than 300,000-fold in size, but the high end of this range (Amoeba) has been called into question. Variation in C-values bears no relationship to the complexity of the organism or the number of genes contained in its genome, an observation that was deemed wholly counterintuitive before the discovery of non-coding DNA and which became known as the C-value paradox as a result. However, although there is no longer any paradoxical aspect to the discrepancy between C-value and gene number, this term remains in common usage. For reasons of conceptual clarification, the various puzzles that remain with regard to genome size variation instead have been suggested to more accurately comprise a complex but clearly defined puzzle known as the C-value enigma. C-values correlate with a range of features at the cell and organism levels, including cell size, cell division rate, and, depending on the taxon, body size, metabolic rate, developmental rate, organ complexity, geographical distribution, and/or extinction risk (for recent reviews, see Bennett and Leitch 2005; Gregory 2005).

References

• Bennett, M.D. and I.J. Leitch. 2005. Genome size evolution in plants. In The Evolution of the Genome (ed. T.R. Gregory), pp. 89-162. Elsevier, San Diego.
• Gregory, T.R. 2001. Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma. Biological Reviews 76: 65-101.
• Gregory, T.R. 2002. A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class Aves. Evolution 56: 121-130.
• Gregory, T.R. 2005. Genome size evolution in animals. In The Evolution of the Genome (ed. T.R. Gregory), pp. 3-87. Elsevier, San Diego.
• Greilhuber, J., J. Dolezel, M. Lysak, and M.D. Bennett. 2005. The origin, evolution and proposed stabilization of the terms 'genome size' and 'C-value' to describe nuclear DNA contents. Annals of Botany 95: 255-260.
• Swift, H. 1950. The constancy of deoxyribose nucleic acid in plant nuclei. Proceedings of the National Academy of Sciences of the USA 36: 643-654.
• Vendrely, R. and C. Vendrely. 1948. La teneur du noyau cellulaire en acide désoxyribonucléique à travers les organes, les individus et les espèces animales : Techniques et premiers résultats. Experientia 4: 434-436.

See also

• Animal Genome Size Database
• Cell nucleus
• Comparative genomics
• C-value enigma
• C-value paradox
• Genome
• Genome size
• Human genome
• Junk DNA
• Noncoding DNA
• Plant DNA C-values Database
• Selfish DNA
• Transposable elements